| File |
Rev. |
Age |
Author |
Last log entry |
gui/
|
|
|
|
|
|
scripts/
|
|
|
|
|
Makefile
|
1.5
|
5 years |
dcutler |
Changed gridalignment
|
|
align_chip.c
|
1.17
|
4 years |
kristian |
Minor bug fix
|
|
align_chip.h
|
1.3
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
caller_utils.c
|
1.3
|
5 years |
dcutler |
Lot's of bug fixes and additions. Principle among them
1) Now uses estimate o... |
|
caller_utils.h
|
1.2
|
6 years |
dcutler |
Major Update to Deal with Genotyping Chips
|
|
chip_orient.c
|
1.6
|
4 years |
kristian |
Fixed bugs in gridalignment
|
|
chip_orient.h
|
1.3
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
config
|
1.1
|
4 years |
kristian |
Added sample config file.
|
|
file_handling.c
|
1.11
|
4 years |
dcutler |
Nimblegen flipped their definition of forward and reverse strand. Gridalignment... |
|
file_handling.h
|
1.4
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
final_rules.c
|
1.1.1.1
|
6 years |
opendpgp |
Initial Import
|
|
final_rules.h
|
1.1.1.1
|
6 years |
opendpgp |
Initial Import
|
|
hyb_tools.c
|
1.1
|
5 years |
dcutler |
Lot's of bug fixes and additions. Principle among them
1) Now uses estimate o... |
|
hyb_tools.h
|
1.1
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
likelihood.c
|
1.4
|
5 years |
dcutler |
Minor bug fixes
|
|
likelihood.h
|
1.2
|
6 years |
dcutler |
Major Update to Deal with Genotyping Chips
|
|
linedraw.c
|
1.6
|
5 years |
dcutler |
More attempts to save poor to mediocre chips
|
|
linedraw.h
|
1.2
|
6 years |
dcutler |
Major Update to Deal with Genotyping Chips
|
|
math_utils.c
|
1.2
|
5 years |
dcutler |
Lot's of bug fixes and additions. Principle among them
1) Now uses estimate o... |
|
math_utils.h
|
1.2
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
patricia.c
|
1.2
|
5 years |
dcutler |
Lot's of bug fixes and additions. Principle among them
1) Now uses estimate o... |
|
patricia.h
|
1.1
|
6 years |
dcutler |
Patricia Trie implementation - Necessary tool for Nimblegen arrays
|
|
ra_basecaller.c
|
1.6
|
5 years |
dcutler |
An attempt to modify the saturation rules
|
|
ra_basecaller.h
|
1.2
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
ra_final.c
|
1.1.1.1
|
6 years |
opendpgp |
Initial Import
|
|
ra_final.h
|
1.1.1.1
|
6 years |
opendpgp |
Initial Import
|
|
ra_genotype.c
|
1.3
|
5 years |
dcutler |
Minor bug fixes
|
|
ra_genotype.h
|
1.1
|
6 years |
dcutler |
Genotyping Calling Program
|
|
ra_gridalign.c
|
1.16
|
4 years |
kristian |
Added conformance threshold [0,1]. This is specifically designed for chips that
... |
|
ra_gridalign.h
|
1.6
|
5 years |
dcutler |
Changed gridalignment for bad chips
|
|
ra_hybcaller.c
|
1.1
|
5 years |
dcutler |
Lot's of bug fixes and additions. Principle among them
1) Now uses estimate o... |
|
ra_hybcaller.h
|
1.1
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
ra_tools_lib.c
|
1.2
|
5 years |
dcutler |
Lot's of bug fixes and additions. Principle among them
1) Now uses estimate o... |
|
ra_tools_lib.h
|
1.2
|
5 years |
dcutler |
Minor header changes associated with major changes to grid alignment and
the gen... |
|
run_all.pl
|
1.4
|
4 years |
kristian |
Added conformance threshold [0,1]. This is specifically designed for chips that
... |
|
run_all_config.pl
|
1.1
|
4 years |
kristian |
Added run_all_config.pl - a config file based version of run_all.pl
|
