Holloway, A.K., D.J. Begun, A. Siepel, and K.S. Pollard. 2008. Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster. In press, Genome Res.

Lawniczak, M.K.N., A.K. Holloway, D.J. Begun, and C.D. Jones.  2008. Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans. In press, Genome Biol. MKN and AKH are co-first authors.*

Li, Y.F., J.C. Costello, A.K. Holloway, and M.W. Hahn. 2008. “Reverse ecology” and the power of population genomics.  In press, Evolution.

Holloway, A.K., M.K.N. Lawniczak, J.G. Mezey, D.J. Begun, and C.D. Jones. 2007. Adaptive gene expression divergence inferred from population genomics. PLoS Genetics 3:2007-2013.*

Begun, D.J., A.K. Holloway, K.S. Stevens, et al. 2007. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biology 5:e310.*

Holloway, A.K. and D.J. Begun. 2007. Rampant adaptive evolution in regions of proteins with unknown function in Drosophila simulans. PLoS One 2:e1113.*

Levine, M.T., A.K. Holloway, U. Arshad, and D.J. Begun. 2007. Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster. Genetics 177:1959-1962.*

Holloway, A.K., T. Palzkill, and J.J. Bull. 2007. Experimental evolution of gene duplicates in a bacterial plasmid model. J. Mol. Evol. 64:215-222.

Holloway, A.K., D.C. Cannatella, H.C. Gerhardt, and D.M. Hillis. 2006. Polyploids with different origins and ancestors form a single sexual polyploid species. Am. Nat. 167:E88-E101.

Begun, D.J., H.A. Lindfors, M.E. Thompson, A.K. Holloway. 2006. Lineage-specific genes in the melanogaster subgroup of Drosophila identified from Drosophila yakuba and D. erecta accessory gland ESTs. Genetics 172:1675-1681.

Holloway, A.K. and D.J. Begun. 2004. Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila. Mol. Biol. Evol. 21:1625-1628.

Holder, M.T., J.A. Anderson, and A.K. Holloway. 2001. Difficulties in detecting hybridization. Syst. Biol. 50:978-982.

Antolin, M.F., B. Van Horne, M.D. Berger, Jr., A.K. Holloway, J.L. Roach, and R.D. Weeks, Jr. 2001. Effective size and genetic structure of a Piute ground squirrel population (Spermophilus mollis). Can. J. Zool. 79:26-34.

Holloway, A.K., M.R. Strand, W.C. Black IV, and M.F. Antolin. 2000. Linkage analysis of sex determination in Bracon sp. near hebetor (Hymenoptera: Braconidae). Genetics 154:205-212.

Adams, R.M.M., U.G. Mueller, A.K. Holloway, A.M. Green, J.M. Narozniak. 2000. Garden sharing, stealing and usurpation in fungus-growing ants. Naturwissenschaften 87:491-493.

Holloway, A.K., G.E. Heimpel, M.R. Strand, and M.F. Antolin. 1999. Survival of diploid males in Bracon sp. near hebetor (Hymenoptera: Braconidae). Annals Entomol. Soc. Am. 92:110-116.

Hamilton, M.T., J. Etienne, W.M. McClure, B.S. Pavey, and A.K. Holloway. 1998. Role of local contractile activity and muscle fiber type on LPL regulation during exercise. Am. J. Physiol. 275(6pt1):E1016-1022.

Holloway, A.K. and G.D. Schnell. 1997. Relationship between numbers of the endangered American burying beetle and available food resources. Biol. Conserv. 81:145-152.

*This material is based upon work supported by the National Science Foundation under Grant No. 0434670.